This has been a recurring issue on last couple of months, where when I subscribe to a mod, it downloads and it appears as installed in the automation launcher but it does not appear in game. So far what I have been doing is to delete the steam automation folder entirely then verify integrity of game files to re-download everything. That solves the issue but is very annoying to have to do that every time I subscribe to a mod (especially as it takes quite a while to re download the game).
Does this happen to other people as well? Do you have an idea on how to fix it?